PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G297200.9.p
Common NamePRUPE_ppa003619mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 554aa    MW: 59591.5 Da    PI: 5.8606
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G297200.9.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.26.9e-09377425355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Prupe.1G297200.9.p 377 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 425
                         58*************************9....556*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.2E-17372443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.20E-11372429No hitNo description
PROSITE profilePS5088815.485374424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16375441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-6377425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10380430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MDMGDQDKFE LENRNEDPMN YSPGMAPDWR FGGSNLTNTS VGLVSTGNSM AVSKGDLVGS  60
SSRPSASMVD SFNPTLWDHP TNSQDLGGFC DINGQTSAST SDTIGIRKGI PVSLRSGIDR  120
PLEMCWNPPN SMLKGGIFLP NGPGMLPQSL SQFPADSAFI ERAARFSCFN GGSFSDMLNP  180
FGVPESMSLY SRGGGMMHWT QEVVAGNGSN AVSCAQSQRN EINGGDASRD VTLPIELGTT  240
EGSPLKNEKK SESLVKSHDE AKHTVGGSGN ESDEADFSGG AGQEEPSMLE GTGVEPSSKG  300
SKKRKRSGQA NELDQAHAQQ PGESAQDASE FQQKGEQHPA STTNKTTGKQ SKQGSQASDP  360
PKEEYIHVRA RRGQATNSHS LAERVRREKI SERMKFLQDL VPGCSKVTGK AVMLDEIINY  420
VQSLQRQVEF LSMKLATVNP RLDFNIEGLL TKDILQSRVG PSSTLGFSPD MPIAYPQLHP  480
SQSGLIQADL PGMGSPSDIL RRAMSSQMTP MTGGFKEPSQ LSESIMLRLN LHNPIFGYSY  540
PMCGRMSSTM LSR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301306KKRKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007225728.10.0hypothetical protein PRUPE_ppa003619mg
TrEMBLM5XLG40.0M5XLG4_PRUPE; Uncharacterized protein
STRINGPOPTR_0010s14600.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.21e-128bHLH family protein